100% Chance of inheriting favorable green genotype
0% Chance of inheriting yellow genotype
0% Chance of inheriting unfavorable red genotype
Marker 2
Stallion
A
A
Mare
A
AA
Aa
a
Aa
aa
25% Chance of inheriting favorable green genotype
50% Chance of inheriting yellow genotype
25% Chance of inheriting unfavorable red genotype
Marker 3
Stallion
A
a
Mare
A
AA
Aa
A
AA
Aa
50% Chance of inheriting favorable green genotype
50% Chance of inheriting yellow genotype
0% Chance of inheriting unfavorable red genotype
Marker 4
Stallion
A
a
Mare
A
AA
Aa
a
Aa
aa
25% Chance of inheriting favorable green genotype
50% Chance of inheriting yellow genotype
25% Chance of inheriting unfavorable red genotype
Example
A
AA
AA
AA
AA
PAR
AA
aa
AA
aa
C
AA
aa
AA
Aa
B
AA
AA
AA
aa
=1 x 0.25 x 0.5 x 0.25 = 0.03125
=1 x 0.25 x 0.5 x 0.25 = 0.03125
=1 x 0.25 x 0.5 x 0.50 = 0.0625
=1 x 0.50 x 0.5 x 0.50 = 0.125
Now do this for thousands of markers!
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